Protein ZmYAB3
ZmYAB3 is a protein in the C2C2-YABBY family.
Information
TF Name: ZmYAB3
Species: Maize
TF Family: C2C2-YABBY
Gene Name(Synonym): YAB3
Uniprot ID: B6TDT4
Subgenome: 1

Protein ZmYAB3

ZmYAB3 is a protein in the C2C2-YABBY family.

Overview of domains present in v5 transcripts
PF04690PF09011
Zm00001eb300360_T003
Zm00001eb300360_T001
Zm00001eb300360_T002
Zm00001eb300360_T004

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d018829DAPseq no logo sequence fimo position
Zm00001d018829DAPseq no logo sequence fimo position
Zm00001d018829ChIPseq no logo sequence fimo position
Zm00001d018829PChIPseq no logo sequence fimo position

Interactions where ZmYAB3 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmYAB3 is the target  
Expand


There are 47 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb300360_T003 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF04690
PF04690
Hover here to show all domains

Nucleotide Sequence
Copy to clipboard
     
Expand

ATCCATATCGCTTGCTGGCTTTGCT...

GRMZM2G106204_T01 from maize genome v3


Related TFome: pUT6110

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS
VADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

GGTTATTATCCTCTCTCTCTCTCTT...

GRMZM2G106204_T02 from maize genome v3

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS
VADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

CAGAGGAAATTGGGCTACACGCCCT...

GRMZM2G106204_T03 from maize genome v3

Amino Acid Sequence
Copy to clipboard

MKGKQEHYYTYLCTFLDQTAHIILSQRPNFFVTKKKL

Nucleotide Sequence
Copy to clipboard
     
Expand

CAGAGGAAATTGGGCTACACGCCCT...

Zm00001d018829_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MYIYEVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYEQASSRNLRTPPMYPVSNN
QPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

TCAGCTGCACTGTCCTCCCACAAGA...

Zm00001d018829_T002 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS
VADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

ATCCTTCTGTTTTGTTTTCCTCCAC...

Zm00001d018829_T003 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS
VADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

ATCCATATCGCTTGCTGGCTTTGCT...

Zm00001eb300360_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS
VADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

GCTAGCAGCTTGTTGTCACACCAAC...

Zm00001eb300360_T002 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFINGLISLGSISASASLTAAAAATREDDDYGSSSSPYTYI
YAVCYVVLGFCKPY

Nucleotide Sequence
Copy to clipboard
     
Expand

GCTAGCAGCTTGTTGTCACACCAAC...

Zm00001eb300360_T004 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MSAQFASEHACYVNCNYCNTILVVNVPSSCSYNVVTVKCGHCTMVLSMDLSPFHQQARTVPDNQVVQNRGFQYNNFGSYE
QASSRNLRTPPMYPVSNNQPQVPPIRPSEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS
VADGGGGSN

Nucleotide Sequence
Copy to clipboard
     
Expand

ATCCATATCGCTTGCTGGCTTTGCT...


Copyright © 2023 Grassius.org | Last updated: 2023-06-26